Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs1764494 chr13:37653007 G/A 0.000287 178 4.17 24.23 25.92 KM Plot
PCPG rs1764495 chr13:37652699 G/T 0.000287 178 4.17 24.23 25.92 KM Plot
PCPG rs17652568 chr18:74591145 T/C 7.12E-9 174 25.77 24.3 10.17 KM Plot
PCPG rs17677532 chr17:50279497 C/T 6.66E-5 177 25.77 27.95 14.47 KM Plot
PCPG rs17698291 chr16:87329155 T/A 0 174 23.82 31.68 2.22 KM Plot
PCPG rs17720657 chr15:43377604 C/T 1.06E-9 178 25.87 24.7 13.35 KM Plot
PCPG rs17747939 chr7:66329634 G/A 0.000217 178 24.7 29.57 33.17 KM Plot
PCPG rs17748121 chr7:66399510 C/T 0.000206 177 24.7 28.42 33.17 KM Plot
PCPG rs17748198 chr7:66425626 C/T 0.000193 176 24.7 29.57 33.17 KM Plot
PCPG rs17761155 chr17:1433913 A/G 1.14E-5 178 24.7 26.73 25.17 KM Plot
PCPG rs17782269 chr14:74377761 T/G 1.16E-5 176 25.4 27.2 10.43 KM Plot
PCPG rs17782328 chr14:74442857 A/G 0.000414 178 10.57 27.78 25.4 KM Plot
PCPG rs17782387 chr14:74584823 G/A 4.4E-7 177 25.4 27.78 7.4 KM Plot
PCPG rs17784386 chr16:89947457 A/G 0.000157 176 25.77 21.5 36.37 KM Plot
PCPG rs17788379 chr3:195777211 C/T 1.72E-7 178 24.53 30.33 7.33 KM Plot